Plenary
Lecture
The Origin of Life: Information Theory Perspective
Professor Krzysztof Cyran
Vice Head of Institute of Informatics
Silesian University of Technology
Gliwice, Poland
E-mail:
Krzysztof.Cyran@polsl.pl
Abstract: The Life on Earth can be considered as one
of the most complex systems that the science tries to
understand. In particular the beginning of Life is still
an unsolved problem having many implications to the
theory of systems Current theories concerning the origin
of life fall into two groups defined by Dyson in his
famous book Origins of Life. The first group assumes
that the transition form abiotic to biotic world
occurred with the emergence of self-replicating RNA
molecules and is referred to as RNA-world hypothesis.
This most commonly accepted hypothesis requires the
existence of the RNA-replicase ribozyme the search of
which is described by McGinness and Joyce in 2003. The
evolution of new genes after appearance of the RNA-replicase
is challenged by instability of Eigen’s hypercycles
composed of many genes supporting cyclically their
replication. An alternative approach, proposed by
Niesert as a compartment model with random segregation
of genes, proved to be stable for very limited number of
genes. Significant advance in the RNA-world theory has
been done in 2007 by Ma et al. who performed intensive
computer simulations demonstrating the emergence of the
auto-catalytic and self-replicating activity of RNA
oligonucleotides. Another relevant computer
simulation-based study was reported in 2007 by Baaske et
al. who observed the extreme accumulation of nucleotides
in simulated hydrothermal pores. The second group of
hypotheses derives life from the biochemistry of amino
acids and their polymers, proteins. This group
encompasses such theories like Dyson’s theory of double
origin which requires at least 8-10 types of monomers
for emergence of the first auto-catalysing protocells
and therefore excludes from this role nucleotides, or
theories described in 2007 by Rode et al. assuming that
salt-induced peptide formation (SIPF) reaction could
have been the crucial step from chemistry towards
biology. In the lecture these theories will be reviewed
as well as models of early stages of RNA-world will be
presented. The latter methodology will be based on
intensive computer simulations of the package model with
random segregation of genetic material. The improvement
proposed here is modeling the environmental changes of
the evolving population by stochastic fluctuation of the
number of replicating molecules (NORM) in the
compartment. This stochasticity can be the sole source
of variation or it can be added to the cell-to-cell
stochasticity originally proposed by Niesert. Further
enhancement relying on BP extinction conditions applied
to simulated population of RNA protocells will also be
proposed. The aim is to model the evolution of the early
RNA-world before the appearance of chromosomal
architecture of genomes. Finally, the comparison of the
single-strand and the compartment models will be carried
out from the information processing perspective using
the Shannon information theory. The potential of models
for preserving the genetic information will be studied
for the compartment and the single strand models with
the complexity threshold estimated in Demetrius-Kimmel
BP model supplemented with possibility of phosphodiester
bond break. The advantage of this latter model lies in
its potential for obtaining reliable estimates of its
parameters. Since the probability of the break of a
phosphodiester bond between two nucleotides can be
experimentally received for feasible conditions of the
early Earth, the model can be more accurate than models
based on information balance between mutation and
natural selection. Advantageous in the proposed
comparison is also the use of information amount as a
measure of evolutionary capacity of hypothetical models
of the RNA-world. In this context it should be noticed
that the problem of error catastrophe is equally
important for both groups of theories concerning the
origin of life, although for each of them the acceptable
value of complexity threshold is different Therefore,
the reliable estimate of this threshold based on
methodology proposed could favor one or the other group,
or at least predict the limits for the length of newly
arisen genomes and in that matter contribute to
revealing the mystery of Life
Brief Biography of the Speaker:
Krzysztof A. Cyran was born in Cracow, Poland, in 1968.
He received MSc degree in computer science (1992) and
PhD degree (with honours) in technical sciences with
specialty in computer science (2000) from the Silesian
University of Technology SUT, Gliwice, Poland. His PhD
dissertation addresses the problem of image recognition
with the use of computer generated holograms applied as
ring-wedge detectors.
He has been an author and co-author of more than 80
technical papers in journals (several of them indexed by
Thomson Scientific) and conference proceedings. These
include scientific articles like: K. A. Cyran and A.
Mrozek, “Rough sets in hybrid methods for pattern
recognition,” Int. J. Intel. Syst., vol. 16, 2001, pp.
149-168, and K. A. Cyran and M. Kimmel, “Interactions of
Neanderthals and modern humans: what can be inferred
from mitochondrial DNA?” Math. Biosci. Eng., vol. 2,
2005, pp. 487-498, as well as a monograph: U. Stanczyk,
K. Cyran, and B. Pochopien, Theory of Logic Circuits,
vol 1 and 2, Gliwice: Publishers of the Silesian
University of Technology, 2007. Dr. Cyran (in 2003-2004)
was a Visiting Scholar in Department of Statistics at
Rice University in Houston, US. He is currently the
Assistant Professor and the Vice Head of the Institute
of Informatics at Silesian University of Technology,
Gliwice, Poland. Since 2009 He is also a Coordinator of
postgraduate studies in the Civil Aviation Personnel
Education Center of Central and Eastern Europe. His
current research interests are in image recognition and
processing, artificial intelligence, digital circuits,
decision support systems, rough sets, aviation and
aeronautics, computational population genetics and
bioinformatics, including Human evolution and Origin of
Life.
Dr. Cyran has been involved in numerous statutory
projects led at the Institute of Informatics and some
scientific grants awarded by the State Committee for
Scientific Research. He also has received several awards
of the Rector of the Silesian University of Technology
for his scientific achievements. In 2004-2005 he was a
member of International Society for Computational
Biology. Currently he is a member of the Editorial Board
of Journal of Biological Systems (indexed by ISI) and a
member of Scientific Committee of the Seventh
International Conference on Rough Sets and Current
Trends in Computing (proceedings published by Springer).
In past he was a member of the Scientific Program
Committees of WSEAS international conferences in Malta
(ECC’08), Rodos (AIC’08, ISCGAV’08, ISTASC’08) and
multiconference in Crete (CSCC’08) as well as member of
the Scientific Committee and Vice-Chair of the
Organizing Committee of the International Conference on
Man-Machine Interactions with proceedings published by
Springer. He is also a reviewer for Studia Informatica
and such journals indexed by Thompson Scientific as:
Optoelectronic Review, Mathematical Biosciences and
Engineering, and Journal of Biological Systems.
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