Plenary
Lecture
DNA Combination and Recombination State
Professor Jelenka Savkovic-Stevanovic
Faulty of Technology and Metallury
Belgrade University
Karnegijeva 4, 11000 Belgrade
Serbia
E-mail:
savkovic@tmf.bg.ac.rs
Abstract:
The discovery that genetic information is coded along
the length of a polymeric molecul composed of only four
types of monomeric units is one of the major scientific
achievements of last century. The content of DNA resides
in the sequence in which these monomers, purine and
pyrimidine deoxyribonucleotides are ordered.
A particular sequence of nucleotides says the same thing
to one organism as it does to another, differences
between organisms reflect genetic programs of different
nucleotides sequences.
The concomitant advances in theory, measuring systems,
and DNA sequencing techniques bring new perspectives to
the helix-to-coil transition. Using the advanced theory,
one can evaluate the stability of individual base pairs,
it is also possible to estimate the probability of each
base pair being in an open state. These stability map
and base pair association opening provide unique
information about the roles of specific regions in
various biologically imortant processes, such as
replication, transcription, recombination, and so on.
Under ordinary condition, native DNA in an aqueous
solution takes a double stranded structure, known as
B-form. This double stranded structure is maintained by
two main forces hydrogen bonds between complementary
pairs on opposite strands, and stacking interactions
between neighboring base pairs. Although the
contributions of these and other interactions to
stabilizing DNA double helix have not yet been
critically evaluated, it is believed that the stacking
interaction makes the dominant contribution.
Since the latter are closer to physiological conditions,
the relationship between functional and thermodynamic
properties of specified regions on a DNA molecule is
better illustrated in the base pair opening profile.
The two complementary strands comprising the double
helix can be separated into single stranded random coils
in various ways. Since the random coils have a larger
degree of conformational freedom than the ordered
double-stranded structure, the ordered structure is
disrupted with an increase in temperature or denaturing
agents.
While a thermal stability map reflects status of DNA
molecules during the helix-coil transition, a base pair
opening profile reprtesents their state under premelting
conditions.
The presence of massive numbers 1012 of molecules
representing each particular edge and vertex of the
graph allowed for all possible molecular combinations to
form simultaneously with their reaction bath.
Brief Biografy of the Speaker:
Full professor, University of Belgrade, Faculty of
Technology and Metallurgy, Serbia. Education: B.Sc. and
M.Sc. degree, University of Belgrade, PhD Thesis
Technical University of Berlin and University of
Belgrade. Research interest: Chemical Engineering and
Process System Engineering; Modelling, Analysis,
Synthesis, Design,
Process optimization; Advanced numerical methods,
Control and On-line optimization; Computer Aided Process
Operation and Design, Safety and Risk analysis;
Information System, Data base, Expert systems, Learning
Systems; Informatics, Management; Artificial
Intelligence, Neural Networks and Fuzzy logics;
Biosystems, Bioinformatics, Pharmaceutical and
Biomedical Engineering. Other professional activites:
Over 800 papers, 8 books, patentees in the field,
Consultant in many companies, Member of many
professional organizations, Reviewer of many journals,
Citation Index over 200. She has cited in many
monographs and she is One of the World's 100 Top
Scientists- IBC Cambridge.
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